Nonpareil

Nonpareil uses the redundancy of the reads in metagenomic datasets to estimate the average coverage and predict the amount of sequences that will be required to achieve “nearly complete coverage”.

Contents:

• Install Nonpareil
  • Conda installation
  • Biocontainer
  • Galaxy
  • Source code installation
• Preprocess the reads
• Redundancy
  • For the impatient
  • Mandatory options
  • Common options
  • Additional options
  • Input
  • Output
• Nonpareil curves
  • For the impatient
  • Nonpareil.curve()
  • Nonpareil.legend()
  • Nonpareil.curve.batch()
• MPI support
  • Requirements
  • Running Nonpareil MPI
  • Resources
• Updates history
  • What’s new in 3.0
  • What’s new in 2.4
  • What’s new in 2.3